prokbert.prokbert_tokenizer.ProkBERTTokenizer.batch_decode

ProkBERTTokenizer.batch_decode(token_ids_list: List[List[int]], **kwargs) → List[str]

Decodes multiple token ID sequences back into their original DNA sequences.

This method converts each list of token IDs in the batch back to its corresponding sequence.

Parameters

token_ids_list (List[List[int]]) – A list of token ID sequences to be decoded. Each element in the list is a list of token IDs.

Returns

A list containing the decoded DNA sequences.

Return type

List[str]

Usage Example:

>>> tokenizer = ProkBERTTokenizer(...)
>>> ids = [[2, 213, 3343, 165, 2580, 248, 3905, 978, 3296, 3]]
>>> sequences = tokenizer.batch_decode(ids)
>>> print(sequences)
...